PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG031868t2
Common NameTCM_031868
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family YABBY
Protein Properties Length: 162aa    MW: 18382.8 Da    PI: 9.7877
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG031868t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY141.87.3e-44513823170
             YABBY  23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvpp. 114
                        v+vP +slf++vtvrCG Ct+l svnla++   +a ++    +     +     ++++++      +  s+s+ ++kl++  +   + + + 
  Thecc1EG031868t2   5 TVNVPCSSLFETVTVRCGQCTNLCSVNLATSFPSRAGKDI---Q-----VPSY--TSSEYRI-----DLGSSSRCKNKLPKRATTVNTTPERv 82 
                       79**************************998877777663...1.....1111..2222222.....22222222233333333322222223 PP

             YABBY 115 virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                       v+rPP+kr r+Ps yn+fikeeiqrik +nPdi+hreafs+aaknWa fP+ihfgl
  Thecc1EG031868t2  83 VNRPPDKRHRAPSLYNQFIKEEIQRIKLNNPDITHREAFSTAAKNWARFPHIHFGL 138
                       89****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046905.4E-515138IPR006780YABBY protein
SuperFamilySSF470951.31E-679131IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MKTYTVNVPC SSLFETVTVR CGQCTNLCSV NLATSFPSRA GKDIQVPSYT SSEYRIDLGS  60
SSRCKNKLPK RATTVNTTPE RVVNRPPDKR HRAPSLYNQF IKEEIQRIKL NNPDITHREA  120
FSTAAKNWAR FPHIHFGLML ETDNQPKLND DSTEHFQQLL K*
Functional Description ? help Back to Top
Source Description
UniProtPromotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5267812e-45HQ526781.1 Gossypium herbaceum clone NBRI_A_1939 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007021796.11e-119PREDICTED: axial regulator YABBY 5 isoform X2
SwissprotQ8GW465e-63YAB5_ARATH; Axial regulator YABBY 5
TrEMBLA0A061F8F11e-117A0A061F8F1_THECC; Plant-specific transcription factor YABBY family protein, putative isoform 2
STRINGEOY133201e-114(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.22e-65YABBY family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC
    The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity.
    Plant Cell, 2015. 27(12): p. 3321-35
    [PMID:26589551]