PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG032402t1
Common NameTCM_032402
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family M-type_MADS
Protein Properties Length: 133aa    MW: 13764.5 Da    PI: 9.674
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG032402t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.52.6e-1613491450
                      HHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF 14 skRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      skR+  ++KKA ELS+LC+a+va++ +s++gk+ +++
  Thecc1EG032402t1 13 SKRQGNLFKKAAELSTLCGARVAIVTISEKGKVSTFP 49
                      8***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-4151IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-131259IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.2451352IPR002100Transcription factor, MADS-box
PfamPF003191.9E-141348IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-71429IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-72950IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MGKQQKAGKA GTSKRQGNLF KKAAELSTLC GARVAIVTIS EKGKVSTFPD SDTVIRRYLA  60
EKVSSRSASG GNALRDSGRK GCKEGGKKQG VEEGAGAGET RQGKNGVCDV AAEEGGGLML  120
KDLNQAWDEQ CD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021288407.13e-76agamous-like MADS-box protein AGL62
TrEMBLA0A061F9R52e-88A0A061F9R5_THECC; Uncharacterized protein
STRINGEOY137614e-89(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2235445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.13e-12M-type_MADS family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]