PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG032403t1
Common NameTCM_032403
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family M-type_MADS
Protein Properties Length: 173aa    MW: 19620.3 Da    PI: 8.4168
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG032403t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.73.4e-192471148
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                      k+ien+++r v fskR++g+lKKA  LS L + e+ vi++s++g++y+
  Thecc1EG032403t1 24 KKIENQRRRWVAFSKRKKGLLKKAAQLSMLSGEEIGVIVISEQGRVYT 71
                      68*********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.2451676IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-201675IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-191787IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-161838IPR002100Transcription factor, MADS-box
PfamPF003193.6E-172571IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-163853IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-165374IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MDGASTSKSR LKRKGSGRRR IEIKKIENQR RRWVAFSKRK KGLLKKAAQL SMLSGEEIGV  60
IVISEQGRVY TSDNADAVIH QYLSIKYDGQ DDNDMMGDEE KEPGKGVMDD GFWRTQPVDI  120
QKMDDGKLSL QEIEVFGEAL VDLKKNVAAR MEEIKGKEYL FDLNKTPDEQ FC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mnm_A4e-1518711871PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B4e-1518711871PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007022237.11e-123PREDICTED: MADS-box transcription factor 1
TrEMBLA0A061FAP01e-122A0A061FAP0_THECC; Uncharacterized protein
STRINGEOY137621e-122(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1836949
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.18e-17M-type_MADS family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]