PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG032408t1
Common NameTCM_032408
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 144aa    MW: 16106.3 Da    PI: 10.8718
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG032408t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.7e-2078126255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +grW+AeIrd    g+r r +lg+f+taeeAa a+++a+ kl+g
  Thecc1EG032408t1  78 RYRGVRQRP-WGRWAAEIRD----GRRMRLWLGTFDTAEEAAVAYDQAAVKLRG 126
                       8********.**********....336*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381235.0E-384143IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000188.37E-3077133No hitNo description
PROSITE profilePS5103223.45978134IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2178134IPR016177DNA-binding domain
SMARTSM003805.5E-3578140IPR001471AP2/ERF domain
PfamPF008473.1E-1478126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-3078134IPR001471AP2/ERF domain
PRINTSPR003671.3E-117990IPR001471AP2/ERF domain
PRINTSPR003671.3E-11100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MSSPPLPNQK PQQPFRRRIV RITVTDADAT DSSSDDETTS PRKNQNQPKK KLVNEITIGM  60
STKENDIIAG PSKGKVKRYR GVRQRPWGRW AAEIRDGRRM RLWLGTFDTA EEAAVAYDQA  120
AVKLRGPNAP TNFKLLDCNV VQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-20781331471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007022239.21e-102PREDICTED: ethylene-responsive transcription factor ERF070
SwissprotQ9C9955e-36ERF70_ARATH; Ethylene-responsive transcription factor ERF070
TrEMBLA0A061FH381e-101A0A061FH38_THECC; Integrase-type DNA-binding superfamily protein, putative
STRINGEOY137641e-101(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-19cytokinin response factor 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]