PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG033015t1
Common NameTCM_033015
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 249aa    MW: 28889.3 Da    PI: 4.3455
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG033015t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.9e-161562148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g W++eEd++l+ +++++G  +W+  +++ g+ R++k+c++rw +yl
  Thecc1EG033015t1 15 KGTWSPEEDQKLITYITRYGIWNWNEMPKYAGLSRSGKSCRLRWMNYL 62
                      799*****************99************************97 PP
2Myb_DNA-binding49.59.6e-1668111146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg +T eE+e +v++ k+lG++ W++Ia++++  Rt++++k++w++
  Thecc1EG033015t1  68 RGIFTREEEEAIVHLQKMLGNR-WSAIAAMLP-QRTDNDIKNYWNT 111
                       7889******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.3971062IPR017930Myb domain
SMARTSM007179.2E-131464IPR001005SANT/Myb domain
SuperFamilySSF466891.61E-2814109IPR009057Homeodomain-like
PfamPF002494.4E-141562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-221669IPR009057Homeodomain-like
CDDcd001678.33E-101762No hitNo description
PROSITE profilePS5129422.33263117IPR017930Myb domain
SMARTSM007171.4E-1367115IPR001005SANT/Myb domain
PfamPF002491.3E-1368111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2370116IPR009057Homeodomain-like
CDDcd001673.79E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MVRQPISWSR TFLKKGTWSP EEDQKLITYI TRYGIWNWNE MPKYAGLSRS GKSCRLRWMN  60
YLRPNIKRGI FTREEEEAIV HLQKMLGNRW SAIAAMLPQR TDNDIKNYWN TRLKGRVENN  120
LTSATASPTG NNSCMEIEQE NSLDADSSFL NTLLELDSAI PTLEDFPEPA TYEFYPSENT  180
CTVEDNFVSS QESWEIQSLL EQPLTVEAFD SEDCQAMPPN SQPWLHEPIY LYESYSNPVD  240
DFWVNPFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27131185109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007022479.20.0PREDICTED: myb-related protein 330
SwissprotQ7XBH41e-47MYB4_ORYSJ; Transcription factor MYB4
TrEMBLA0A061FHP80.0A0A061FHP8_THECC; MYB21
STRINGEOY140040.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17382411
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05100.14e-49myb domain protein 74
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]
  3. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]