PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG033016t1
Common NameTCM_033016
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 245aa    MW: 28204.5 Da    PI: 4.7674
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG033016t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.31e-141562148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g W++eEd++l+ ++ ++G  +W+  +++ g+ R +k+c+ rw +yl
  Thecc1EG033016t1 15 KGTWSPEEDQKLIAYIMRYGIWNWNEMPKYAGLSRPGKSCRRRWMNYL 62
                      799*****************99************************97 PP
2Myb_DNA-binding40.94.8e-1368110146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg++T+ E+  +v++ k+lG++ W++Ia++++  Rt++++k++w++
  Thecc1EG033016t1  68 RGNFTKAEEGTIVHLQKMLGNR-WSAIAAMLQ--RTDNDIKNYWNT 110
                       89********************.********9..**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.8871062IPR017930Myb domain
SMARTSM007172.2E-121464IPR001005SANT/Myb domain
SuperFamilySSF466891.33E-2414108IPR009057Homeodomain-like
PfamPF002492.2E-131562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-211669IPR009057Homeodomain-like
CDDcd001671.96E-91762No hitNo description
PROSITE profilePS5129420.71363116IPR017930Myb domain
SMARTSM007171.5E-1167114IPR001005SANT/Myb domain
PfamPF002493.7E-1168110IPR001005SANT/Myb domain
CDDcd001673.31E-670112No hitNo description
Gene3DG3DSA:1.10.10.608.3E-2170115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MVRQPISWNR AFLKKGTWSP EEDQKLIAYI MRYGIWNWNE MPKYAGLSRP GKSCRRRWMN  60
YLRPNIKRGN FTKAEEGTIV HLQKMLGNRW SAIAAMLQRT DNDIKNYWNT RLKKRVGNNL  120
ASATASPTAN NSGIETEQEN SSDADSSSLN TLLELDPALK DFPEPATYEI SPSENTYTVE  180
DNFVSSQESW EIQSLLEQPL TEVAFDSEDC QALSPNSQLW LHEPLYLYES FYNPVDDFWV  240
SPFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25131165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007022480.21e-179PREDICTED: myb-related protein Myb4
TrEMBLA0A061F9H20.0A0A061F9H2_THECC; MYB21
STRINGEOY140050.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17382411
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.13e-45myb domain protein 15
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]