PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG033816t1

Common Name

TCM_033816

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

HSF

Protein Properties

Length: 362aa MW: 39855 Da PI: 7.9302

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG033816t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114.6	6.2e-36	25	117	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ Fkkg+k+ll Thecc1EG033816t1 25 FLTKTYQLVDDPTTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGEKHLL 108 9***************************************************************99.........************ PP XXXXXXXXX CS HSF_DNA-bind 95 ekikrkkse 103 ++i+r+k++ Thecc1EG033816t1 109 CEIHRRKTA 117 ****986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	3.1E-38	17	109	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.6E-60	21	114	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.74E-34	22	114	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	8.3E-20	25	48	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	7.7E-32	25	114	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.3E-20	63	75	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	64	88	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.3E-20	76	88	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008356	Biological Process	asymmetric cell division
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MAVILDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPTTDH IVSWGEDDTT FVVWRPPEFA 60 RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KKGEKHLLCE IHRRKTAQPQ 120 VAINHHHHHH PHSPLVNAPS FFPFPSRVSI SPADSDEQAN WCDSPPLSSP RGGTGVSVVA 180 GGGGGGVGGY SSSVTALSED NERLRRSNNL LMSELAHMRK LYNDIIYFVQ NHVKPVTPSN 240 SYSPSLLLCG PPSSAAPPVV TTNSSLLQKP LNQLLGYYPN SPKQSPQVQV LNSPSATSQS 300 SLTILEEASS NSCKTKLFGV PLQSKKRLHP EYGAANMETN KARLVLEKDD LGLNLMPSST 360 C*

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MAVILDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPTTDH IVSWGEDDTT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KKGEKHLLCE IHRRKTAQPQ  120
VAINHHHHHH PHSPLVNAPS FFPFPSRVSI SPADSDEQAN WCDSPPLSSP RGGTGVSVVA  180
GGGGGGVGGY SSSVTALSED NERLRRSNNL LMSELAHMRK LYNDIIYFVQ NHVKPVTPSN  240
SYSPSLLLCG PPSSAAPPVV TTNSSLLQKP LNQLLGYYPN SPKQSPQVQV LNSPSATSQS  300
SLTILEEASS NSCKTKLFGV PLQSKKRLHP EYGAANMETN KARLVLEKDD LGLNLMPSST  360
C*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-21	20	116	25	131	Heat shock factor protein 1
5d5v_B	1e-21	20	116	25	131	Heat shock factor protein 1
5d5v_D	1e-21	20	116	25	131	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00187	DAP	Transfer from AT1G46264	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR067410	0.0	KR067410.1 Gossypium hirsutum HSF29 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007017200.2	0.0	PREDICTED: heat stress transcription factor B-4
Swissprot	Q9C635	1e-121	HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBL	A0A061FAP9	0.0	A0A061FAP9_THECC; Heat shock transcription factor B4
STRING	EOY14425	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2900	28	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	1e-117	heat shock transcription factor B4

Link Out ? help Back to Top
Phytozome	Thecc1EG033816t1
Entrez Gene	18591177

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]