PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG033870t1

Common Name

TCM_033870

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Protein Properties

Length: 229aa MW: 26058.2 Da PI: 10.6047

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG033870t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.4	4.1e-16	130	218	2	98
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 k +++s+v+ +l lp +f++++ +k ++ +tl de+g+++ + rk++ l++GWk+F+ a++L +gD +vF+l++ ++f +v Thecc1EG033870t1 130 TKSMLQSHVTGGFWLGLPVHFCKRNL-PK-RDEVMTLIDEEGQEYPAIYLARKTG----LSGGWKGFAVAHKLVDGDALVFQLVRPTTF--KV 214 58999***************9994.33.5568***********656665....**********************986777..88 PP EEE- CS B3 95 kvfr 98 ++r Thecc1EG033870t1 215 YIIR 218 8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	8.63E-24	123	220	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.6E-19	123	220	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.02E-26	127	218	No hit	No description
PROSITE profile	PS50863	12.041	129	220	IPR003340	B3 DNA binding domain
SMART	SM01019	6.1E-23	129	220	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.6E-14	130	218	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MVVARQELSY EECRRKRVEE NKKRMEALNL PQLSQALRTP SFKPSPRKQV KPRTGEKQLV 60 VVRRSSRVAN KPAPVYHEVL VEKVIIPRRR VSKHRDLSNR VYASDEARAE ALEKAEKLES 120 GLEPDFPTLT KSMLQSHVTG GFWLGLPVHF CKRNLPKRDE VMTLIDEEGQ EYPAIYLARK 180 TGLSGGWKGF AVAHKLVDGD ALVFQLVRPT TFKVYIIRVK GSEQSNKL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007017287.1	1e-168	PREDICTED: B3 domain-containing protein At5g42700
Refseq	XP_017981234.1	1e-168	PREDICTED: B3 domain-containing protein At5g42700
Refseq	XP_017981235.1	1e-168	PREDICTED: B3 domain-containing protein At5g42700
Refseq	XP_017981236.1	1e-168	PREDICTED: B3 domain-containing protein At5g42700
Swissprot	Q9FMZ4	2e-80	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	A0A061FCQ7	1e-166	A0A061FCQ7_THECC; AP2/B3-like transcriptional factor family protein, putative
STRING	EOY14512	1e-167	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3744	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	7e-76	B3 family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG033870t1
Entrez Gene	18591228

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]