PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG033928t1

Common Name

TCM_033928

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Dof

Protein Properties

Length: 245aa MW: 24958.7 Da PI: 8.1902

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG033928t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.6	2.8e-38	26	85	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ l+cprCdst tkfCyynny+lsqPryfCk+CrryWt+GG+lrnvPvGgg+rk k+s Thecc1EG033928t1 26 TEPLPCPRCDSTSTKFCYYNNYNLSQPRYFCKSCRRYWTQGGTLRNVPVGGGTRKASKRS 85 57899**************************************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	7.7E-33	28	83	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.012	29	83	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	31	67	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-19	33	77	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MPTDSGDRRP VRVPGTMGSH PPPKLTEPLP CPRCDSTSTK FCYYNNYNLS QPRYFCKSCR 60 RYWTQGGTLR NVPVGGGTRK ASKRSRCSSG SSPSVATSSS SSSVTHEVES MPMAAANPVS 120 VMPGPGVKPE MGLADVNLNE SVDLPVNGSF TSFLNSQGEG YLSLGGYGFG AGSGFDGVWG 180 YPGNGYLGGF SGGGSGGPGG VIGGTTGCNT WQTTNDVEGG GGLADGDCFG WPGLAISAPG 240 KGLK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007017388.2	1e-174	PREDICTED: dof zinc finger protein DOF1.6
TrEMBL	A0A061FCH9	1e-173	A0A061FCH9_THECC; Dof-type zinc finger DNA-binding family protein, putative
STRING	EOY14613	1e-174	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9465	24	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G47655.1	9e-28	Dof family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG033928t1
Entrez Gene	18591281

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]