PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG034046t1
Common NameTCM_034046
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB_related
Protein Properties Length: 93aa    MW: 10538.9 Da    PI: 8.8514
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG034046t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.53.6e-09652347
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                       WT+   +l+ +a + + ++   +W+  ar +g g+t +++k ++ ++
  Thecc1EG034046t1  6 TWTPKQNKLFENALAIYDKDtpdRWHNLARAVG-GKTVEEVKMHYENL 52
                      7********************************.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.103257IPR017884SANT domain
SMARTSM007172.4E-8355IPR001005SANT/Myb domain
SuperFamilySSF466896.55E-13561IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-4656IPR009057Homeodomain-like
CDDcd001672.86E-7653No hitNo description
PfamPF002493.1E-6652IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MASGSTWTPK QNKLFENALA IYDKDTPDRW HNLARAVGGK TVEEVKMHYE NLVEDIKQIE  60
SGQVPLPPYK KAGGSKGYSY MDEEQRLRNL RL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-33292692RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007017546.15e-64PREDICTED: protein RADIALIS-like 3
SwissprotF4JVB82e-34RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A061FCL01e-62A0A061FCL0_THECC; DnaJ subfamily C member 2
STRINGEOY147712e-63(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.17e-37RAD-like 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]