PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG034059t1

Common Name

TCM_034059

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

MYB_related

Protein Properties

Length: 87aa MW: 9814.96 Da PI: 9.4291

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG034059t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.8	2.5e-08	15	58	3	44
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT+ +l+ +a + + ++ +W ++a+ +g +++++++ ++ Thecc1EG034059t1 15 YWTPKQNKLFEKALAVYDKDtpdRWQKVAAAVG-EKSAEEVRRHY 58 5******************************.9*******9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.133	8	62	IPR017877	Myb-like domain
SMART	SM00717	1.8E-6	12	64	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.79E-12	14	70	IPR009057	Homeodomain-like
Pfam	PF00249	7.5E-7	15	58	IPR001005	SANT/Myb domain
CDD	cd00167	4.34E-6	16	58	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 87 aa Download sequence Send to blast
MASSSMTSSR DSNSYWTPKQ NKLFEKALAV YDKDTPDRWQ KVAAAVGEKS AEEVRRHYEI 60 LVADLMYIES GQVPIPNYRS TGSNRR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	2e-33	6	84	1	79	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007017563.1	1e-58	PREDICTED: protein RADIALIS-like 3
Refseq	XP_017981098.1	1e-58	PREDICTED: protein RADIALIS-like 3
Swissprot	Q1A173	2e-33	RADL6_ARATH; Protein RADIALIS-like 6
TrEMBL	A0A061FD09	3e-57	A0A061FD09_THECC; RAD-like 6
STRING	EOY14788	5e-58	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM221	28	198

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75250.2	6e-34	RAD-like 6

Link Out ? help Back to Top
Phytozome	Thecc1EG034059t1
Entrez Gene	18591400

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]