PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG034098t1
Common NameTCM_034098
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 426aa    MW: 46444.7 Da    PI: 7.1932
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG034098t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.66e-053123501255
                       HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Thecc1EG034098t1 312 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 350
                       7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.458300349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.00E-5310354No hitNo description
SuperFamilySSF474598.37E-11310362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-9314357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MESENVHHQH QLQDQLVGSS SLPIPSCYGV ASTHSWTPTP SFALSSSEFN PNHNGDILNS  60
RQKNDILASP QNSSMIQDWT DNGGSFTTSQ SCYDLHLAKI KEELSESLTR FTDMLSNTSS  120
VGESHQLPPS PNYLKNEQKD LHDLSEKLLL KTISSGFPMF SAGEFYSATQ NCSIPGGTAL  180
PSRRNFSQIY PSINISNLNQ ASSANIPSSF DMNLEALDLL SSARYCRSSS LSHPSHDHNL  240
GIYKESPPFG LHHHMQQSNQ RAAYSPSKLS PFTSELSEAK RPSTLPEPKA TAAATKKSRL  300
ESRASCPPFK VRKEKLGDRI AALQQLVAPF GKTDTASVLM EAIGYIKFLQ NQVETLSVPY  360
MKSSRNNASR SNQGGSTMED GNEEPKRDLR SRGLCLVPLS CMSYVTNDSG GGIWPPPPPN  420
FSGGT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007017613.20.0PREDICTED: transcription factor bHLH110
SwissprotQ9SFZ39e-96BH110_ARATH; Transcription factor bHLH110
TrEMBLA0A061FD540.0A0A061FD54_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
STRINGEOY148380.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93512533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.13e-92bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]