PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG034148t1
Common NameTCM_034148
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MIKC_MADS
Protein Properties Length: 226aa    MW: 26051.7 Da    PI: 9.4319
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG034148t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.85.8e-28959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      k ien +nrqvt+skRrng++KKA+EL vLCda++++i+fsstgkl+e++s
  Thecc1EG034148t1  9 KLIENATNRQVTYSKRRNGLFKKANELTVLCDARASIIMFSSTGKLHEFIS 59
                      569**********************************************86 PP
2K-box996.8e-3371169199
             K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                       yqk  g++l+++++e++q++l+kLk+ ++nL++e+R+++G++L++ s+++Lq Leq++e+s+k iR++K++++ +qi++++kk ++++e++++
  Thecc1EG034148t1  71 YQKVLGVDLWTTHYEKMQEQLKKLKEVNRNLRKEIRQRMGDCLNDVSFEDLQALEQEMETSVKLIRDRKYRVISNQIDTSRKKVRNVEEIHRN 163
                       78888999************************************************************************************* PP

             K-box  94 Lrkkle 99 
                       L ++l+
  Thecc1EG034148t1 164 LLHELD 169
                       *99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.2E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.88161IPR002100Transcription factor, MADS-box
CDDcd002653.09E-38280No hitNo description
PRINTSPR004047.6E-27323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-36395IPR002100Transcription factor, MADS-box
PfamPF003192.9E-241157IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-273859IPR002100Transcription factor, MADS-box
PfamPF014863.8E-2282168IPR002487Transcription factor, K-box
PROSITE profilePS5129716.55184174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MARGKIQIKL IENATNRQVT YSKRRNGLFK KANELTVLCD ARASIIMFSS TGKLHEFISP  60
STSTKQIYDQ YQKVLGVDLW TTHYEKMQEQ LKKLKEVNRN LRKEIRQRMG DCLNDVSFED  120
LQALEQEMET SVKLIRDRKY RVISNQIDTS RKKVRNVEEI HRNLLHELDA IKEDPYGLVD  180
NGVDYDTIIG YQNGGPRIFA LRLQPNHPNL HSGGGSDLTT YPLLE*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021283648.11e-164floral homeotic protein PMADS 1
SwissprotP237061e-122DEFA_ANTMA; Floral homeotic protein DEFICIENS
TrEMBLA0A061FCW91e-166A0A061FCW9_THECC; Floral homeotic protein DEFICIENS isoform 1
STRINGEOY149061e-167(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52612750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.11e-93MIKC_MADS family protein
Publications ? help Back to Top
  1. Schwarz-Sommer Z, et al.
    Characterization of the Antirrhinum floral homeotic MADS-box gene deficiens: evidence for DNA binding and autoregulation of its persistent expression throughout flower development.
    EMBO J., 1992. 11(1): p. 251-63
    [PMID:1346760]
  2. Sommer H, et al.
    Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors.
    EMBO J., 1990. 9(3): p. 605-13
    [PMID:1968830]
  3. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  4. Gallois JL, et al.
    Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana.
    Gene, 2013. 526(2): p. 299-308
    [PMID:23747397]
  5. Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H
    Multiple interactions amongst floral homeotic MADS box proteins.
    EMBO J., 1996. 15(16): p. 4330-43
    [PMID:8861961]