PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG034470t1
Common NameTCM_034470
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ZF-HD
Protein Properties Length: 255aa    MW: 27288.2 Da    PI: 6.8304
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG034470t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.47.3e-3354108358
       ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                       ++rY+eClkNhA+s+GghavDGCgEfm++ geegt +alkCaAC+CHRnFHR+e +
  Thecc1EG034470t1  54 TIRYRECLKNHAVSIGGHAVDGCGEFMAA-GEEGTLDALKCAACNCHRNFHRKEGD 108
                       78**************************9.999********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-2348106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.2E-3055106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.0E-2956106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.69957106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.98E-21177248IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-32179248IPR009057Homeodomain-like
TIGRFAMsTIGR015651.3E-27190246IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MDFDEHEDQD EEMGMAVPPG YDSLGNSQAA LSRMGPASGG EGPASATPRK VGSTIRYREC  60
LKNHAVSIGG HAVDGCGEFM AAGEEGTLDA LKCAACNCHR NFHRKEGDGE GNTYNPHHHQ  120
HHPQFSAYYR APPPAGYLHL TPPPQHRPLA LPAASGGGGG GIAGGYSRED EDVSNPSSSG  180
GGGGGSGGLK KRFRTKFTSE QKEKMLEFAE RLGWRIQKHD EAAVEQFCEE TGVKRHVLKV  240
WMHNNKHTLV FSVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-301912481875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017981879.11e-154PREDICTED: zinc-finger homeodomain protein 2
SwissprotQ6YXH53e-75ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A061FDI90.0A0A061FDI9_THECC; Transcription factor, putative
STRINGEOY153900.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45052454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-72homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]