PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG034649t2
Common NameTCM_034649
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 399aa    MW: 43408.4 Da    PI: 6.3215
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG034649t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.23.8e-10239287355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Thecc1EG034649t2 239 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 287
                       58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.96E-11234291No hitNo description
SuperFamilySSF474596.02E-17234303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485236286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16237304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-7239287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10242292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MAMSSISMYN KPSNASDPFF GSSWDPIVSL SQSESLVGSS MVSHSEFANS HYPLLMENQG  60
ITSTAHFSQY QSDPSFVELV PKLPGFGSGN WSEMVGPFSL PQCGQIANGK CPQNYALNTE  120
VGNERACTNS TQSRDEHQLS DEGVVGASPN GKRRKRVPES NSPLRSYQNA DEEPQKDPSG  180
ESSDVPKGQD EKIQKTEQIT GVNSRGKQIA KQAKDSSQTG EAPKENYIHV RARRGQATNS  240
HSLAERVRRE KISERMRLLQ ELVPGCNKIT GKAVMLDEII NYVQSLQQQV EFLSMKLATV  300
NPELNIDLER VLSKDILHSR GGSAGILGFG PGLNSSHPFP PRIFPGTISG VPSTNPQFPP  360
LPQTVLDNEL QNLFQMGYDS SSAMDSLGPN AGRLKSEL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007018426.20.0PREDICTED: transcription factor bHLH74 isoform X1
TrEMBLA0A061FF540.0A0A061FF54_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2
STRINGEOY156500.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.11e-99bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]