PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG034664t1

Common Name

TCM_034664

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bZIP

Protein Properties

Length: 142aa MW: 16740.7 Da PI: 6.1305

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG034664t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	42.4	1.5e-13	55	107	4	56
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 +++rr+++NRe+ArrsR RKk +e+ +e+v L eN++Lk++l+ +++ Thecc1EG034664t1 55 ERKQRRMISNRESARRSRWRKKRHLENVTEEVNRLNRENQQLKNRLSLVINHC 107 589*****************************************999887777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.3E-13	52	123	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.6E-11	53	104	No hit	No description
PROSITE profile	PS50217	10.932	54	101	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.94E-11	56	109	No hit	No description
Pfam	PF00170	6.9E-11	56	107	IPR004827	Basic-leucine zipper domain
CDD	cd14702	6.54E-15	57	108	No hit	No description
PROSITE pattern	PS00036	0	59	74	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MFVTEEAVQF QLPVHETVFT PEEVEELLSY LETDEPISPN SGSEGSSRAI YSADERKQRR 60 MISNRESARR SRWRKKRHLE NVTEEVNRLN RENQQLKNRL SLVINHCHVV WRENEQLRSE 120 SEALWAKLLD LYWTLAAMQS Q*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007018448.2	8e-98	PREDICTED: bZIP transcription factor 2
TrEMBL	A0A061FFM7	9e-98	A0A061FFM7_THECC; Basic leucine-zipper 4, putative
STRING	EOY15673	1e-98	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12232	24	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59530.1	4e-27	basic leucine-zipper 4

Link Out ? help Back to Top
Phytozome	Thecc1EG034664t1
Entrez Gene	18591941

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]