PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG034722t1

Common Name

TCM_034722

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

LBD

Protein Properties

Length: 226aa MW: 24493.8 Da PI: 8.4921

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG034722t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	92.3	5.5e-29	2	104	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C++ Cvl+ + p++q +++ +++k+FG+s +l+l++++pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++l+ Thecc1EG034722t1 2 SCNGCRVLRKGCSETCVLRSSLrwiesPEAQGNATLFLAKFFGRSDLLSLISSVPETQRPALFQSLLFEACGRTVNPVNGAVGLLSSGNWHLC 94 6****************************************************************************************** PP DUF260 89 qlkaelallk 98 q++a+++l++ Thecc1EG034722t1 95 QAAADTVLQG 104 **998775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.277	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.7E-24	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MSCNGCRVLR KGCSETCVLR SSLRWIESPE AQGNATLFLA KFFGRSDLLS LISSVPETQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHLCQAAADT VLQGGALRPI PGILAGVRTP 120 SCDESSDRFC FNSCDFQSRY AQSKPLMTMM MMENQSASAA SDLSLSLTTK LGGGRRGSGR 180 RYEEERKRPR AAAAASLYSE ESEITTFKSK ENEGSQERKI LNLFV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007018527.2	1e-164	PREDICTED: LOB domain-containing protein 38
Swissprot	Q9SN23	2e-64	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A061FGD5	1e-163	A0A061FGD5_THECC; LOB domain-containing protein 38, putative
STRING	EOY15752	1e-164	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM821	28	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	2e-64	LOB domain-containing protein 38

Link Out ? help Back to Top
Phytozome	Thecc1EG034722t1
Entrez Gene	18591997

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]