PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG035123t1

Common Name

TCM_035123

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

LBD

Protein Properties

Length: 152aa MW: 17051.3 Da PI: 7.3695

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG035123t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.5	1.4e-40	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaC++lrr+C++dC+++pyfp+++p++f +h+++Gasnv kll++lp++ r +a++sl++eA++r++dPvyG+vg+i+ lqqq++++ ++ Thecc1EG035123t1 5 RCAACRYLRRRCPPDCIFSPYFPSNNPQRFVSIHRIYGASNVAKLLQQLPTHLRAEAADSLYFEAQCRVEDPVYGCVGLIFLLQQQIHNAVSQ 97 6****************************************************************************************** PP DUF260 94 lallkee 100 la++++e Thecc1EG035123t1 98 LAKTQAE 104 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.415	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.3E-40	5	102	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MNSGRCAACR YLRRRCPPDC IFSPYFPSNN PQRFVSIHRI YGASNVAKLL QQLPTHLRAE 60 AADSLYFEAQ CRVEDPVYGC VGLIFLLQQQ IHNAVSQLAK TQAEIAVLKS QAQHPQAQQV 120 EVEPEFNNFL QQQLDYVADL NFSNQGSSGF M*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-37	6	105	12	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-37	6	105	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017981145.1	1e-107	PREDICTED: LOB domain-containing protein 24
Swissprot	P59468	2e-54	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A061FP58	1e-107	A0A061FP58_THECC; LOB domain-containing protein 23
STRING	EOY16304	1e-108	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	2e-45	LOB domain-containing protein 24

Link Out ? help Back to Top
Phytozome	Thecc1EG035123t1
Entrez Gene	18592343

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]