PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG035565t1
Common NameTCM_035565
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family Trihelix
Protein Properties Length: 638aa    MW: 70075 Da    PI: 6.2329
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG035565t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.79e-3086170187
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                       rW++qe+laL+++r++m+ ++r+++ k+plWeevs+k++e g++rs+k+Ckek+en+ k++k++k+g+ ++++++   +++fdqlea
  Thecc1EG035565t1  86 RWPRQETLALLKIRSDMDVTFRDASVKGPLWEEVSRKLAELGYHRSAKKCKEKFENVYKYHKRTKDGRTGKSDGK--AYRFFDQLEA 170
                       8********************************************************************975555..5*******85 PP
2trihelix104.11e-32444529187
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                       rW+k ev aLi++r++++ +++++  k+plWee+s++m++ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  Thecc1EG035565t1 444 RWPKVEVEALIKLRTSLDAKYQENGPKGPLWEEISAAMKKLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 529
                       8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.7E-483145IPR001005SANT/Myb domain
CDDcd122035.70E-2485150No hitNo description
PfamPF138372.3E-1985171No hitNo description
PROSITE profilePS500906.91185143IPR017877Myb-like domain
SMARTSM007174.4E-4441503IPR001005SANT/Myb domain
CDDcd122032.82E-27443508No hitNo description
PfamPF138377.8E-23443530No hitNo description
Gene3DG3DSA:1.10.10.602.5E-4443500IPR009057Homeodomain-like
PROSITE profilePS500907.189443501IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MLGCGDTSVS VLGSSSGGGG GDVAAAAAVA TTVSSSGALD GRSEAAANML GSNGNNNNNN  60
NNTNNNSGDD DRGRVDEGDR SFGGNRWPRQ ETLALLKIRS DMDVTFRDAS VKGPLWEEVS  120
RKLAELGYHR SAKKCKEKFE NVYKYHKRTK DGRTGKSDGK AYRFFDQLEA LENISSIQSP  180
AAPPPPSPQL KPQHQTVMPA ANPPSLSHIT IPSTTLASLP QNIVPPNASF TVPSFPSTNP  240
TIQPPPPTTN PTIPSFPNIS ADLMSNSTSS STSSDLELEG RRKRKRKWKD FFERLMKEVI  300
QKQEDMQKKF LEAIEKREHE RLVREDAWRM QEMARINRER EILAQERSIA AAKDAAVMAF  360
LQKLSEQRNP GQAQNNPLPS QQPQPPPQAP PQPVPAVATA APPAATAAPV PAPAPPLLPL  420
PMVNLDVSKT DNGDQSYTPS SSSRWPKVEV EALIKLRTSL DAKYQENGPK GPLWEEISAA  480
MKKLGYNRNA KRCKEKWENI NKYFKKVKES NKKRPEDSKT CPYFHQLDAL YREKNKLDNS  540
SNELKPENSV PLLVRPEQQW PPPPSEPDDH QHDHATEDME SEQNQDEDEK DGDDEEEDEG  600
GDYEIVASKP VSMGTAAICP ASGSGSGNGA LEWRHLN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280285RRKRKR
2280286RRKRKRK
3281286RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9637821e-104JX963782.1 Gossypium hirsutum clone NBRI_TRANS-1010 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017981065.10.0PREDICTED: trihelix transcription factor GT-2
SwissprotQ391171e-148TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A061FJ900.0A0A061FJ90_THECC; Duplicated homeodomain-like superfamily protein isoform 1
STRINGEOY167070.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48492553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-92Trihelix family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]