PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG035897t1
Common NameTCM_035897
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family WRKY
Protein Properties Length: 232aa    MW: 26061.7 Da    PI: 6.278
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG035897t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.3e-30139197159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +dDgy+WrKYG+K vk++++pr+YYrC++agC+vkk+ver++edp++v++tYeg+H+he
  Thecc1EG035897t1 139 MDDGYKWRKYGKKRVKNNPNPRNYYRCSTAGCKVKKRVERDKEDPRFVITTYEGKHHHE 197
                       59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.1E-33128199IPR003657WRKY domain
SuperFamilySSF1182901.23E-27132199IPR003657WRKY domain
PROSITE profilePS5081132.489134199IPR003657WRKY domain
SMARTSM007745.1E-33139198IPR003657WRKY domain
PfamPF031064.7E-24140196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MSNSNITTFL AAAAAAVNIP QQTSSPIYSH AVMDDNSTDQ LDFDEDFLIL AADAGEGTNF  60
ETNAPSSSCL KASTTLSQSP FLSSDEMTSS SVNGCWEVPR SSFVDYMQQN GEGYVKTMEM  120
DDHVGFKIAF RTKSDLEIMD DGYKWRKYGK KRVKNNPNPR NYYRCSTAGC KVKKRVERDK  180
EDPRFVITTY EGKHHHESPS ADTDICHNAI NPDQRTSHQL QFLHHHQQHQ P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-27129200778Probable WRKY transcription factor 4
2lex_A3e-27129200778Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6698042e-68KF669804.1 Gossypium hirsutum WRKY transcription factor 113 (WRKY113) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007019683.11e-177PREDICTED: probable WRKY transcription factor 51 isoform X1
TrEMBLA0A061FJ191e-176A0A061FJ19_THECC; WRKY DNA-binding 50-like protein
STRINGEOY169081e-177(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2209745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.12e-28WRKY DNA-binding protein 51
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]