PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG035992t1

Common Name

TCM_035992

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Whirly

Protein Properties

Length: 237aa MW: 26264 Da PI: 10.3765

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG035992t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	179.9	5e-56	61	196	2	137
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkal 94 vyk+kaa++v + +ptf+++dsgnlkl+r+G+++l++ +a++erkydWek+q+fals+tev++l+++++++ +effhdp++ +sn+G+v k l Thecc1EG035992t1 61 VYKGKAAFSVTPLLPTFSKIDSGNLKLDRRGAMMLTFWPAVGERKYDWEKRQRFALSPTEVGSLISMGAHDVSEFFHDPSMLSSNAGQVSKKL 153 9****************************************************************************************** PP Whirly 95 kvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137 ++ l G G++++l+v+n+++k+ne+f vP++ aefavl+++ Thecc1EG035992t1 154 YIKALDGGNGYMISLTVSNNILKSNERFNVPITTAEFAVLKTA 196 *9999******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.30.31.10	1.3E-69	47	215	IPR009044	ssDNA-binding transcriptional regulator
SuperFamily	SSF54447	2.82E-62	54	228	IPR009044	ssDNA-binding transcriptional regulator
Pfam	PF08536	4.5E-55	61	195	IPR013742	Plant transcription factor

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006281	Biological Process	DNA repair
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005739	Cellular Component	mitochondrion
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MMKLWRSRNL SSQTLLSAKR GDVRDALWSH AFESRAAIST SIHDFASKGN STARVIAPYT 60 VYKGKAAFSV TPLLPTFSKI DSGNLKLDRR GAMMLTFWPA VGERKYDWEK RQRFALSPTE 120 VGSLISMGAH DVSEFFHDPS MLSSNAGQVS KKLYIKALDG GNGYMISLTV SNNILKSNER 180 FNVPITTAEF AVLKTACSFA LPHIIGWDWL TNHSRKGIEG SSSKVNPKLL DSEWDR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3n1h_A	3e-83	46	213	2	169	StWhy2
3n1i_A	3e-83	46	213	2	169	protein StWhy2
3n1j_A	3e-83	46	213	2	169	Protein StWhy2
3n1k_A	3e-83	46	213	2	169	protein StWhy2
3n1l_A	3e-83	46	213	2	169	protein StWhy2
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269\|PubMed:21911368}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017981884.1	1e-175	PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial
Swissprot	D9J034	2e-95	WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBL	A0A061FJ27	1e-174	A0A061FJ27_THECC; Whirly 2, putative isoform 1
STRING	EOY16918	1e-174	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12358	27	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71260.1	8e-85	WHIRLY 2

Link Out ? help Back to Top
Phytozome	Thecc1EG035992t1
Entrez Gene	18592762

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]