PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG036255t1
Common NameTCM_036255
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB_related
Protein Properties Length: 188aa    MW: 20709.6 Da    PI: 10.2269
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG036255t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.61.4e-134891447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      WT++E++ ++ + + +G g Wk+I++ + k+Rt+ q+ s+ qk+
  Thecc1EG036255t1 48 WTEQEHKAFLMGLEVYGQGKWKKISENLVKTRTPSQIASHAQKF 91
                      ******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.334096IPR017930Myb domain
SuperFamilySSF466893.11E-164297IPR009057Homeodomain-like
TIGRFAMsTIGR015578.1E-144392IPR006447Myb domain, plants
SMARTSM007175.9E-94494IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-104787IPR009057Homeodomain-like
CDDcd001676.93E-104891No hitNo description
PfamPF002492.7E-104890IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MVRQVTQTRR CSICRLQGHY STTCQLKTKD HSMPVSSKLL ERKQGKFWTE QEHKAFLMGL  60
EVYGQGKWKK ISENLVKTRT PSQIASHAQK FNLWLKAVAN DPEKKHNFSI FQVQQTPISQ  120
FSSSTANGGA SETTSQIPIF QFSSSIASGG VSETTSQVAH PLANTIAMNP CLCLRMSPAG  180
HATPHSC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007019862.11e-138PREDICTED: transcription factor MYB1R1
TrEMBLA0A061FK841e-137A0A061FK84_THECC; Uncharacterized protein
STRINGEOY170871e-138(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.13e-20Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]