PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG036269t1
Common NameTCM_036269
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 202aa    MW: 22161 Da    PI: 6.0229
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG036269t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-193282155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      s y+GVr +k +g+Wv+eIr+p   gk++r++lg+f t+e+Aa+a++ a++ l+g
  Thecc1EG036269t1 32 STYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFETPEMAAAAYDVAALHLRG 82
                      56*****999.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.11E-243292No hitNo description
SuperFamilySSF541714.64E-233291IPR016177DNA-binding domain
PROSITE profilePS5103223.6833390IPR001471AP2/ERF domain
PfamPF008471.3E-123382IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-323391IPR001471AP2/ERF domain
SMARTSM003801.1E-363396IPR001471AP2/ERF domain
PRINTSPR003675.5E-133445IPR001471AP2/ERF domain
PRINTSPR003675.5E-137292IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MKQSISSRKK QGINTYMDGK NSSSATRGGV SSTYRGVRKR KWGKWVSEIR EPGKKTRIWL  60
GSFETPEMAA AAYDVAALHL RGREARLNFP ELIDCLPRPP SSNAEDIRMV AQEAALRVRT  120
NAAASSSEAG GSCSSAGPGV GPVTVRLSPT QIQAINESPL DSPKMWMQMS EPLMMDEAMM  180
FCDENGENEW DDMQNDSLWD P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-173494667ATERF1
3gcc_A3e-173494667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017980907.11e-147PREDICTED: ethylene-responsive transcription factor ERF021
SwissprotQ9C9I27e-62ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A061FJ371e-146A0A061FJ37_THECC; Integrase-type DNA-binding superfamily protein
STRINGEOY170911e-147(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.13e-53ERF family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]