PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG036270t1
Common NameTCM_036270
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 194aa    MW: 21212 Da    PI: 4.6249
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG036270t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.1e-191464155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      s y+GVr++k +g+Wv+eIr+p   gk++r++lg++ tae+Aa+a++ a++ ++g
  Thecc1EG036270t1 14 SNYRGVRQRK-WGKWVSEIREP---GKKTRIWLGSYETAEMAAAAYDVAALHFRG 64
                      57*******9.**********8...557***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.17E-231473IPR016177DNA-binding domain
CDDcd000182.16E-241474No hitNo description
PfamPF008471.2E-121464IPR001471AP2/ERF domain
SMARTSM003807.5E-391578IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-331573IPR001471AP2/ERF domain
PROSITE profilePS5103223.8541572IPR001471AP2/ERF domain
PRINTSPR003672.2E-101627IPR001471AP2/ERF domain
PRINTSPR003672.2E-103854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MEHEIDCHAR VSPSNYRGVR QRKWGKWVSE IREPGKKTRI WLGSYETAEM AAAAYDVAAL  60
HFRGRAARLN FPELVDSLPR PASSSAEDVQ MAAQEAALRL RRPKISSEVA MGACAGTGAA  120
AAADGSLGPI RVGLSQSQIQ AINEFPLDSP KMWMELAGAL LMAEPTLYGD EFDDAELMIS  180
EYEEIVQVES IWD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-181477468ATERF1
3gcc_A3e-181477468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007019867.21e-140PREDICTED: ethylene-responsive transcription factor ERF022
SwissprotQ9LQ282e-50ERF22_ARATH; Ethylene-responsive transcription factor ERF022
TrEMBLA0A061FK901e-139A0A061FK90_THECC; Integrase-type DNA-binding superfamily protein
STRINGEOY170921e-139(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.11e-49ERF family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]