PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG036394t1
Common NameTCM_036394
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family TCP
Protein Properties Length: 410aa    MW: 43181.7 Da    PI: 7.3337
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG036394t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1311.2e-4086190289
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..... 88 
                        ++k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  ++s +ss+s+ s++     
  Thecc1EG036394t1  86 KPAKRPTKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTISAPlsksa 178
                       5789*****************************************************************999888888888884444455454 PP

               TCP  89 ...........k 89 
                                  +
  Thecc1EG036394t1 179 plsfhsalglyS 190
                       555555555542 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.32592146IPR017887Transcription factor TCP subgroup
PfamPF036343.4E-3892198IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MEIMESQSNK SSSSSDHHHH HHGQKQEASL QLVSRDSQPQ AAAGGAHGTS SQPQAPAHVP  60
FTGMGSIPNQ IGVHSSSPTS TSSLAKPAKR PTKDRHTKVD GRGRRIRMPA VCAARVFQLT  120
RELGHKSDGE TIEWLLQQAE PAIIAATGTG TIPANFSTLN VSLRSSGSTI SAPLSKSAPL  180
SFHSALGLYS STNGDESRRF SNTSAGAGML GFHHQLYPQI LNPDGSMRSS NENYSTKPFR  240
EDLFKETSQH NAETGGVGAN SPKPERTGMQ DQEPGSFRAA NIVPAPAMWA VAPATTNGGN  300
AFWMLPVGGG ATASATVPEA QMWTFPAHCS GGGRVSPVQL GSMILQQQQP VGQQLGLGVT  360
ETNMGLFGSA MNLYSNNRVG LGMNLEQQHQ ENQTQGSDSG DENPATDSQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00228DAPTransfer from AT1G72010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007020020.10.0PREDICTED: transcription factor TCP23
SwissprotQ9C7G42e-85TCP22_ARATH; Transcription factor TCP22
TrEMBLA0A061FIV60.0A0A061FIV6_THECC; TCP family transcription factor, putative
STRINGEOY172450.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70532441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35560.18e-75TCP family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  3. Dong H, et al.
    Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis.
    Genes Dev., 2017. 31(2): p. 197-208
    [PMID:28167503]