PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG036484t5

Common Name

TCM_036484

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 243aa MW: 25961.8 Da PI: 6.0366

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG036484t5	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.9	1.3e-06	197	220	6	29
HHHHHHHHHHHHHHHHHHHCTSCC CS HLH 6 nerErrRRdriNsafeeLrellPk 29 +++Er RR ri +++ +L+el+P+ Thecc1EG036484t5 197 SIAERVRRTRISDRIRKLQELVPN 220 689********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.064	191	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.41E-6	194	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.97E-4	195	227	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.2E-5	196	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042335	Biological Process	cuticle development
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MQPTPGGSGS SSGGGGGGGE LSRGGLARFR SAPATWLEAL LEEEEEDPLK PNQCLTQLLT 60 ANSTTPATRD SGPFSSSADP AGLFEPTGFQ RQNSSPADFL GNNSGAASDA YFSNFGIPAN 120 YDYLSPNIDA SPSSKRAREL DTQYPPTKFQ SQLKGEQRGQ ISSGVSNLID VDMEKLLEDS 180 VPCRVRAKRG CATHPRSIAE RVRRTRISDR IRKLQELVPN MDKVGLLVGV NFNQEIQSSI 240 GR*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00181	DAP	Transfer from AT1G35460	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007020097.2	1e-163	PREDICTED: transcription factor bHLH80 isoform X3
Swissprot	Q9C8P8	6e-78	BH080_ARATH; Transcription factor bHLH80
TrEMBL	A0A061FJ20	1e-176	A0A061FJ20_THECC; Basic helix-loop-helix DNA-binding superfamily protein isoform 5
STRING	EOY17321	1e-162	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35460.1	5e-66	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG036484t5
Entrez Gene	18593029

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]