PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG036568t1
Common NameTCM_036568
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MIKC_MADS
Protein Properties Length: 204aa    MW: 23170.8 Da    PI: 10.026
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG036568t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.65.2e-26958150
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      krien   rqvtf+kRr+g+lKKA ELSvLCdae+ v+ifs +gklye +
  Thecc1EG036568t1  9 KRIENPVHRQVTFCKRRAGLLKKARELSVLCDAEIGVVIFSAHGKLYELA 58
                      79*********************************************965 PP
2K-box48.34.3e-17881591687
             K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                       + ++e++ Lk+eie Lq+ +R + G + e ++l eL  Le++Le  + +iRs K+++l+++i+ l++k++++
  Thecc1EG036568t1  88 EAKKEIDMLKQEIEILQKGLRYMFGGGSEIMTLDELVVLEKHLEIWIYHIRSAKMDILFQEIQMLRNKNNAQ 159
                       5789****************************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.8E-35160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-28175IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.702161IPR002100Transcription factor, MADS-box
CDDcd002652.48E-40276No hitNo description
PRINTSPR004045.0E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.8E-241056IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.88886172IPR002487Transcription factor, K-box
PfamPF014862.2E-1689157IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MARGRVQMKR IENPVHRQVT FCKRRAGLLK KARELSVLCD AEIGVVIFSA HGKLYELATK  60
GTMQGLIERY TNYNGGTPPD EAIAEPIEAK KEIDMLKQEI EILQKGLRYM FGGGSEIMTL  120
DELVVLEKHL EIWIYHIRSA KMDILFQEIQ MLRNKNNAQR PFSAQQSLKS ASSNGNLLPV  180
SKHRYHNADF QTSATNHKHR VNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-18196185MEF2C
5f28_B9e-18196185MEF2C
5f28_C9e-18196185MEF2C
5f28_D9e-18196185MEF2C
6byy_A8e-18196185MEF2 CHIMERA
6byy_B8e-18196185MEF2 CHIMERA
6byy_C8e-18196185MEF2 CHIMERA
6byy_D8e-18196185MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0991429e-61BT099142.1 Soybean clone JCVI-FLGm-16J2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017980923.11e-113PREDICTED: agamous-like MADS-box protein AGL12
SwissprotA2YQK95e-65MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G85e-65MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLA0A061FS941e-151A0A061FS94_THECC; Agamous-like MADS-box protein A
STRINGEOY174041e-151(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70522641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.12e-62AGAMOUS-like 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S, et al.
    Further characterization of a rice AGL12 group MADS-box gene, OsMADS26.
    Plant Physiol., 2008. 147(1): p. 156-68
    [PMID:18354041]
  3. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  4. Khong GN, et al.
    OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.
    Plant Physiol., 2015. 169(4): p. 2935-49
    [PMID:26424158]