PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG036616t1

Common Name

TCM_036616

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

ERF

Protein Properties

Length: 141aa MW: 15950.6 Da PI: 4.935

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG036616t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51.5	2.5e-16	20	63	1	48
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaia 48 s y GVr+++ +gr++AeIr p + r++lg+f+taeeAa a++ Thecc1EG036616t1 20 SWYLGVRRRP-WGRYAAEIRNP-----HtkERHWLGTFDTAEEAAIAYDL 63 6799****.******7.....336****************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	7.9E-10	20	63	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.27E-18	20	79	IPR016177	DNA-binding domain
PROSITE profile	PS51032	20.231	21	79	IPR001471	AP2/ERF domain
SMART	SM00380	5.5E-24	21	85	IPR001471	AP2/ERF domain
CDD	cd00018	1.47E-23	22	78	No hit	No description
PRINTS	PR00367	5.3E-9	22	33	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	9.2E-25	22	78	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.3E-9	44	60	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MENFPSLAYR NPKRSSRRSS WYLGVRRRPW GRYAAEIRNP HTKERHWLGT FDTAEEAAIA 60 YDLSSISFSG IDRARTNFYY PFLVLPSPPP STPPPPPPTP ELEGDDDDQE MNNVNEDDES 120 VVIASILQSF AHSANCSFYP *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	9e-15	22	70	15	64	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007020218.1	1e-100	PREDICTED: ethylene-responsive transcription factor LEP
TrEMBL	A0A061FKK1	2e-98	A0A061FKK1_THECC; Integrase-type DNA-binding superfamily protein
STRING	EOY17443	4e-99	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12890.1	3e-28	ERF family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG036616t1
Entrez Gene	18593103

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]