PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG036843t2
Common NameTCM_036843
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 214aa    MW: 24726.6 Da    PI: 10.3659
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG036843t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.74.2e-1329853599
                      EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3 35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                        +l++  +r+W+vkl  ++++    +++GW+eF+++++L +gD++vF++ g++ f   v+vf++
  Thecc1EG036843t2 29 RAVLRSCGSRTWSVKL--KGRR----FEDGWEEFARDHDLYVGDVLVFRHGGNMVF--DVMVFDT 85
                      578899999*******..7777....9**********************9999999..8888875 PP
2B361.41.5e-19132213486
                       E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       +++++++lk + l +p+kfa+++g+  +   +++l d++grsW  +l+++k++g++++++GW++ + an+Lke D+v+++l+g
  Thecc1EG036843t2 132 ATLKPNNLKVSKLNIPRKFARSNGLTDRF-CEMVLVDQQGRSWIANLRHKKSDGQVYIGRGWRNLCIANNLKEEDSVLLELIG 213
                       444777888888***********999765.5*************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.561186IPR003340B3 DNA binding domain
SuperFamilySSF1019366.67E-151084IPR015300DNA-binding pseudobarrel domain
CDDcd100171.31E-131184No hitNo description
SMARTSM010191.5E-81386IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-152484IPR015300DNA-binding pseudobarrel domain
PfamPF023626.4E-92883IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-23122214IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-20125214IPR015300DNA-binding pseudobarrel domain
CDDcd100175.29E-20128213No hitNo description
PROSITE profilePS5086314.113129214IPR003340B3 DNA binding domain
SMARTSM010191.1E-15130214IPR003340B3 DNA binding domain
PfamPF023622.9E-18131213IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MSNAKFTPIM PHFLKPLLPG FHKQLNCERA VLRSCGSRTW SVKLKGRRFE DGWEEFARDH  60
DLYVGDVLVF RHGGNMVFDV MVFDTRSACQ REYPLFAMKG KDQKKSSAKR FGKQLEKCTS  120
TSFKHEHPYF VATLKPNNLK VSKLNIPRKF ARSNGLTDRF CEMVLVDQQG RSWIANLRHK  180
KSDGQVYIGR GWRNLCIANN LKEEDSVLLE LIGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017983529.11e-157PREDICTED: B3 domain-containing protein REM8 isoform X2
TrEMBLA0A061GHD11e-159A0A061GHD1_THECC; DNA binding protein, putative isoform 2 (Fragment)
STRINGEOY292491e-148(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.17e-40B3 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]