PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG036912t1
Common NameTCM_036912
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family WRKY
Protein Properties Length: 256aa    MW: 28553.2 Da    PI: 8.934
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG036912t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.72.7e-2998157159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dg++WrKYGqK+ k+++ pr+Y+rC++a gCpvkkkv+r+ ed++++  tYeg+Hnh+
  Thecc1EG036912t1  98 VKDGFQWRKYGQKVTKDNPSPRAYFRCSMApGCPVKKKVQRCVEDKSFLLATYEGQHNHD 157
                       58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-2992158IPR003657WRKY domain
PROSITE profilePS5081126.11993159IPR003657WRKY domain
SuperFamilySSF1182901.23E-2595158IPR003657WRKY domain
SMARTSM007741.1E-3398158IPR003657WRKY domain
PfamPF031063.1E-2499157IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDAPNSNEEK VEALQVELEH LKRANEALRL MLEAMSRKCN TLEAYLRESS SQPTGSRLTR  60
IGSYDEHLNK RPRPEVPSMA KPSQVFVKTD PRDKSLIVKD GFQWRKYGQK VTKDNPSPRA  120
YFRCSMAPGC PVKKKVQRCV EDKSFLLATY EGQHNHDVQS SPMESLSSAE SSAMLSTTSS  180
PYRVLSNSFR PTITLDLTLS GSNVENSRNP RNLVQETSCN DHDNKRIEDY VASLTKDPNF  240
TVALAAAVAR SINGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-21971581373WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16973KRPRP
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000269|PubMed:16528562}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6698343e-70KF669834.1 Gossypium hirsutum WRKY transcription factor 70 (WRKY70) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007011726.20.0PREDICTED: probable WRKY transcription factor 40
SwissprotQ6IEK51e-47WRK76_ORYSI; WRKY transcription factor WRKY76
TrEMBLA0A061GHL20.0A0A061GHL2_THECC; Transcription factor, putative
STRINGEOY293450.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156101014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.21e-44WRKY DNA-binding protein 18
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]