PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG037194t1
Common NameTCM_037194
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 262aa    MW: 28444.5 Da    PI: 4.7289
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG037194t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.6e-1968118155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Thecc1EG037194t1  68 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 118
                       68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.1E-1368118IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2169127IPR016177DNA-binding domain
PROSITE profilePS5103223.4269126IPR001471AP2/ERF domain
SMARTSM003804.4E-3769132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-3269127IPR001471AP2/ERF domain
CDDcd000182.17E-3270128No hitNo description
PRINTSPR003672.8E-107081IPR001471AP2/ERF domain
PRINTSPR003672.8E-1092108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MTEPQNSETE SSSNSFSSPP LSPSSPGSTH SPPNSVPSST TTLNAKPETT SSDSNKKIKR  60
MRDSSKHPVY RGVRMRNWGK WVSEIREPRK KSRIWLGTFP TPEMAARAHD VAALSIKGNS  120
AILNFPELAN SLPRPVSLAP RDVQAAAAKA AQMDKFDSPS PFTTSSATLS SSSSLSSLVS  180
QMELSSGSDE LSQIVELPSL ETSYDSVELK NEFVFVDSVD GWFYTPPWLQ SVDDCGYVCD  240
QLGVPESVLQ NGFDEGLLWD Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1964130976Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007012129.10.0PREDICTED: dehydration-responsive element-binding protein 3
SwissprotQ9LYD35e-76DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A061GK290.0A0A061GK29_THECC; Integrase-type DNA-binding superfamily protein
STRINGEOY297480.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-69ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]