PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG037293t1

Common Name

TCM_037293

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

LBD

Protein Properties

Length: 243aa MW: 26598.4 Da PI: 7.9103

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG037293t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.7	2.2e-39	15	114	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCaaCk++rrkC+++C lap fpa+++k+f n+hklFG+sn+lk++++l++ +r +am+s+v+eA+ ra+dPv G++g+i++l+ q++ +kae Thecc1EG037293t1 15 ACAACKYQRRKCTRNCLLAPFFPANHQKDFLNAHKLFGVSNILKIIRNLDPPQRLIAMKSIVFEANTRANDPVGGCYGIISDLKMQIDWVKAE 107 7******************************************************************************************** PP DUF260 94 lallkee 100 +l+ ++ Thecc1EG037293t1 108 RDLVLHQ 114 9988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.963	14	115	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.0E-37	15	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MQRPKGNNCS AGSPACAACK YQRRKCTRNC LLAPFFPANH QKDFLNAHKL FGVSNILKII 60 RNLDPPQRLI AMKSIVFEAN TRANDPVGGC YGIISDLKMQ IDWVKAERDL VLHQLAICKA 120 QTAAASQQQS GQQQMVQVGD HEANALQCLE GLTVYDAMPV HCREGEVNLV QGNYDDVGED 180 IKPLLPVFDD KGAGSFPFDS KVSIQCSDKL VSKEEVGSIQ HELKHDLKSA ASLFTLTNGK 240 SR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-26	11	115	8	111	LOB family transfactor Ramosa2.1
5ly0_B	4e-26	11	115	8	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007012290.2	1e-180	PREDICTED: LOB domain-containing protein 22 isoform X1
Swissprot	Q9LRW1	5e-42	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	A0A061GRZ6	0.0	A0A061GRZ6_THECC; LOB domain-containing 22-like protein
STRING	EOY29909	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22116	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	2e-43	LOB domain-containing protein 22

Link Out ? help Back to Top
Phytozome	Thecc1EG037293t1
Entrez Gene	18588067

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]