PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG037394t1
Common NameTCM_037394
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family M-type_MADS
Protein Properties Length: 187aa    MW: 21551 Da    PI: 10.2735
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG037394t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.51.3e-161053245
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                      r e+   rq  +skR++g+ KKA+EL +LCd++ a+++fs+t+k
  Thecc1EG037394t1 10 RLESAKARQAKYSKRKAGLVKKAKELAILCDVDLALLLFSPTDK 53
                      6789999**********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.6E-25160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.287161IPR002100Transcription factor, MADS-box
CDDcd001201.80E-20257No hitNo description
SuperFamilySSF554554.84E-22283IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-15323IPR002100Transcription factor, MADS-box
PfamPF003192.7E-181156IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-152338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-153859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MGRRKLKIQR LESAKARQAK YSKRKAGLVK KAKELAILCD VDLALLLFSP TDKPTLFVGQ  60
DKDLSTVVER LSKLPLEERE ERRDYTMKLL NKFYANSDSE ALPRNVSEDR SNVLKLHEDQ  120
LKELKEKLAE KSKILRDWKY PQNVEDLSQI KIMEEHLIAY LNGVRNRKSQ LAMEQQKGQE  180
GLKGAK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007012432.11e-131PREDICTED: agamous-like MADS-box protein AGL65
TrEMBLA0A061GKI91e-130A0A061GKI9_THECC; AGAMOUS-like 33
STRINGEOY300511e-131(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73301838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26320.12e-29AGAMOUS-like 33
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]