PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG037415t1
Common NameTCM_037415
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 235aa    MW: 25531.8 Da    PI: 4.8963
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG037415t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.8e-182575155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      s+ykGVr +k +g+Wv+eIr p++   r r++lg++++ae+Aa+a +aa  +l+g
  Thecc1EG037415t1 25 SKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDSAEKAARAFDAALYCLRG 75
                      89*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-202584IPR016177DNA-binding domain
PfamPF008475.0E-112575IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-292684IPR001471AP2/ERF domain
CDDcd000184.21E-282685No hitNo description
PROSITE profilePS5103222.5762683IPR001471AP2/ERF domain
SMARTSM003805.5E-332689IPR001471AP2/ERF domain
PRINTSPR003672.0E-92738IPR001471AP2/ERF domain
PRINTSPR003672.0E-94965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MVKPNCTASS TSSTEHVSDS TSSSSKYKGV RKRKWGKWVS EIRLPNSRER IWLGSYDSAE  60
KAARAFDAAL YCLRGRDAKF NFPENPPEIV GGRSLSPQEI QAVAARFANE VEADGTAGNH  120
NHINNINNSI ITSNESHSRN NNVGTEQNTS SSSVSVSGWG TPAIQVESTE MMDYSSFFSM  180
LDTDHGMSDY GFYSGLLPGD QLYPPPLPSP PVDDNVDDQN GGAGFSQSSF LWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1622831072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12733KGVRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ9441706e-87KJ944170.1 Gossypium hirsutum cultivar Reba B50 ethylene-responsive transcription factor ERF-IIb3 mRNA, complete cds.
GenBankKP7801856e-87KP780185.1 Gossypium hirsutum C-repeat binding factor 2 (CBF2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007012474.21e-172PREDICTED: ethylene-responsive transcription factor ERF017
TrEMBLA0A061GL081e-173A0A061GL08_THECC; Integrase-type DNA-binding superfamily protein, putative
STRINGEOY300931e-174(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-49ERF family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]