PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG037486t1
Common NameTCM_037486
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 198aa    MW: 21751.2 Da    PI: 4.3514
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG037486t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-181766255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++kGVr +k +g+Wv+eIr p++   r r++lg+++tae+Aa+a +aa  +l+g
  Thecc1EG037486t1 17 RFKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDTAEKAARAFDAALFCLRG 66
                      69****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.3E-111766IPR001471AP2/ERF domain
PROSITE profilePS5103221.8651774IPR001471AP2/ERF domain
CDDcd000182.52E-291776No hitNo description
SMARTSM003809.4E-331780IPR001471AP2/ERF domain
PRINTSPR003671.3E-91829IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-291875IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-201875IPR016177DNA-binding domain
PRINTSPR003671.3E-94056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MVKNISDRPA AERSDLRFKG VRKRKWGKWV SEIRLPNSRE RIWLGSYDTA EKAARAFDAA  60
LFCLRGGSAK FNFPDNPPDI DGGRSLTPPE IQAAAARFAQ MEPPRTQAEQ STSGFQTESS  120
SPSISEGTVQ LDSDLPMDGS FMDLLTMGSD NYASDYGIFP GFDDLSSYFL GSSVPNIGCE  180
EDNIEGILVP ESFLWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1517741472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11824KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6165266e-68JX616526.1 Gossypium hirsutum clone NBRI_GE61260 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007012584.21e-139PREDICTED: ethylene-responsive transcription factor ERF017
SwissprotQ84QC23e-56ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A061GLE51e-142A0A061GLE5_THECC; AP2/ERF domain-containing transcription factor
STRINGEOY302031e-143(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-58ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  4. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]