PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG037576t5

Common Name

TCM_037576

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NF-YA

Protein Properties

Length: 229aa MW: 25455.4 Da PI: 9.2077

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG037576t5	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	103.2	2.3e-32	71	127	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RRq Rakle+++kl k+rkpylheSRh hAl+R RgsgGrF Thecc1EG037576t5 71 DGPIYVNAKQYHGILRRRQYRAKLEAQNKL-VKARKPYLHESRHLHALNRVRGSGGRF 127 57**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	7.4E-36	69	130	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.271	70	130	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.4E-27	73	127	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	7.7E-24	73	95	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	75	95	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	7.7E-24	104	127	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MKPVFLLNNP NTVFSPSHPN YNHSMAYARN PYADAYFGGL FTPYGQQAII QPQVAGSAPT 60 RIPLPLDLDE DGPIYVNAKQ YHGILRRRQY RAKLEAQNKL VKARKPYLHE SRHLHALNRV 120 RGSGGRFLPT KKLQQCDPTF NTSSHCISDT SCSDQKNSRS EFESRCSHTA EYVGSSTSCS 180 DITSVSNSDG NFQQPEHRFS DISPHVGSHM RNSGSMCNGI QHCASIVR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-20	71	132	2	63	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007012703.1	1e-171	PREDICTED: nuclear transcription factor Y subunit A-3
Refseq	XP_007012705.1	1e-171	PREDICTED: nuclear transcription factor Y subunit A-3
TrEMBL	A0A061GLB1	1e-170	A0A061GLB1_THECC; Nuclear transcription factor Y subunit A-3, putative isoform 5
TrEMBL	A0A061GLP6	1e-170	A0A061GLP6_THECC; Nuclear transcription factor Y subunit A-3, putative isoform 1
STRING	EOY30324	1e-171	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	2e-42	nuclear factor Y, subunit A3

Link Out ? help Back to Top
Phytozome	Thecc1EG037576t5
Entrez Gene	18588323

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]