PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG037650t1

Common Name

TCM_037650

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

LBD

Protein Properties

Length: 240aa MW: 26569.2 Da PI: 7.564

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG037650t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	107.4	1.1e-33	12	112	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCaaC+++rr+C ++C lapyfpa++ +f+n+ k FG sn++k+++++++++r++a++s+++e++ar++ P +G++g+i++l++ le ++e Thecc1EG037650t1 12 ACAACRHHRRRCHQSCELAPYFPASKYDEFKNALKHFGLSNIVKIMSTVRPDQRQAAAESILMEGNARLDHPAHGCLGIIRNLHSLLEIYESE 104 7****************************************************************************************** PP DUF260 94 lallkeel 101 la+++++l Thecc1EG037650t1 105 LAAVNQQL 112 **9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.112	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.1E-31	12	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MNGEGRGGNP PACAACRHHR RRCHQSCELA PYFPASKYDE FKNALKHFGL SNIVKIMSTV 60 RPDQRQAAAE SILMEGNARL DHPAHGCLGI IRNLHSLLEI YESELAAVNQ QLAVFKASSS 120 STPQPSQPEI DPLVAKMFNE GDNSRWVNLE ADATINSVPS DSRGKQPVRP DEEARDDEAD 180 DIFMEKQKTP SFCRPNLLET KGAISVIRIS FFLPTAQLFF PAVHLPLTGR RKLDHKLSV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-19	13	112	12	111	LOB family transfactor Ramosa2.1
5ly0_B	9e-19	13	112	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021275719.1	1e-125	LOB domain-containing protein 22-like
TrEMBL	A0A061GLM3	1e-178	A0A061GLM3_THECC; LOB domain-containing protein 22, putative
STRING	EOY30441	1e-179	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6498	26	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	5e-21	LOB domain-containing protein 22

Link Out ? help Back to Top
Phytozome	Thecc1EG037650t1
Entrez Gene	18588388

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]