PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG037820t1
Common NameTCM_037820
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 234aa    MW: 26312.3 Da    PI: 9.8886
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG037820t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.41.1e-12112212192
                       EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE CS
                B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkl 84 
                       f+k+lt sdv  s +rl+l k+ +++        +++++ ++ ++ +d +g+++ +++i + + + +vl++GW +F+ ++ L    Dfv++  
  Thecc1EG037820t1 112 FEKQLTESDVKVSqCRLSLNKSDVQNAvmpllkkEEDSTDGIPVKTYDANGKEYPMTFITWSS-KFHVLKEGWMKFCTDHSLLaHQDFVTLWA 203
                       99*******98666**********655***9999777779999***************76666.59***************996789999876 PP

                       -SS.SEE.. CS
                B3  85 dgr.sefel 92 
                        ++ +++ l
  Thecc1EG037820t1 204 FRNlQTGDL 212
                       666555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-16112208IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-8112218IPR003340B3 DNA binding domain
CDDcd100172.61E-13112220No hitNo description
SuperFamilySSF1019368.83E-15112210IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDKSKGIENG YPEEYREQYL AALTVASFKY EKLSNETALA LNGLKTKIVR QVRAKRNKPK  60
ALKEPNPTGG SVNAQNLPGT PSLCLPLSSY FPPDIPPVAR LNGLIGRCSK PFEKQLTESD  120
VKVSQCRLSL NKSDVQNAVM PLLKKEEDST DGIPVKTYDA NGKEYPMTFI TWSSKFHVLK  180
EGWMKFCTDH SLLAHQDFVT LWAFRNLQTG DLSFVITSRR LEVFEAIKRK RLN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017982273.11e-173PREDICTED: putative B3 domain-containing protein At4g03160
TrEMBLA0A061GNJ51e-173A0A061GNJ5_THECC; B3 domain-containing protein, putative
STRINGEOY306971e-174(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21031835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.12e-22B3 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]