PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG037888t1
Common NameTCM_037888
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family HSF
Protein Properties Length: 341aa    MW: 38135.2 Da    PI: 5.8743
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG037888t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.95.1e-36131052103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       F+ k+y++++d+++++li w + +nsf+v+d+ +f++++Lp yFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll
  Thecc1EG037888t1  13 FVVKTYQMVNDPTTDTLIAWGKANNSFIVMDPLDFSQRILPAYFKHSNFSSFVRQLNTYGFRKVDPDK---------WEFANECFLRGQKHLL 96 
                       9****************************************************************999.........**************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                       ++i r+k++
  Thecc1EG037888t1  97 KNIVRRKQN 105
                       *****9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.6E-549102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.108.4E-3810102IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.44E-3410102IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.9E-181336IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-3013102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-185163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-186476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MESNSNNNIV APFVVKTYQM VNDPTTDTLI AWGKANNSFI VMDPLDFSQR ILPAYFKHSN  60
FSSFVRQLNT YGFRKVDPDK WEFANECFLR GQKHLLKNIV RRKQNKNPYM QMKAEDLDDK  120
QIVMEIARLK EEQKSLEEEL QGMNKRLEAT ERRPQQMMAF LCKVVEDPDL LPRMMLEKER  180
TRQLNAEKKQ RLTIMPSSYS SSSSLAVSNN SVKSEDEEEV NPGVISPPET GFDVDNNFCR  240
SNYQSSPSPE DSRELLLGHR PITGQVMNYG CATVTSQMPA VVLAPSVIKN GTAMSSPGTS  300
SLGGYGDNNG QLGYFGEMAA AGMEARPPPP YPFSLLGGGF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-261010226129Heat shock factor protein 1
5d5v_B2e-261010226129Heat shock factor protein 1
5d5v_D2e-261010226129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007013185.20.0PREDICTED: heat stress transcription factor C-1
SwissprotQ9LV524e-96HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A061GUK50.0A0A061GUK5_THECC; Heat shock transcription factor C1, putative
STRINGEOY308040.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67752743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.13e-89heat shock transcription factor C1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]