PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG038105t1

Common Name

TCM_038105

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

YABBY

Protein Properties

Length: 185aa MW: 20786.6 Da PI: 8.0039

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG038105t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	198.7	2.4e-61	6	157	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlk.snvekeesasts 95 + ++eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q l+ ++ ++ + ++++++ + +++++++ s Thecc1EG038105t1 6 DVAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDV--------QAPN--YATQDYRtELGSSSKCNKLS 88 5689******************************************99999998884........1112..12222220122222222222 PP YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++ ++v++ v+rPPekr rvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Thecc1EG038105t1 89 MRT------PANNVTEERVVNRPPEKRPRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 157 222......222333334589**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.2E-69	8	157	IPR006780	YABBY protein
SuperFamily	SSF47095	4.45E-8	101	150	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	9.7E-5	106	151	IPR009071	High mobility group box domain
CDD	cd01390	1.38E-5	108	147	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MSSCIDVAPE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQSLS 60 WQDVQAPNYA TQDYRTELGS SSKCNKLSMR TPANNVTEER VVNRPPEKRP RVPSAYNQFI 120 KEEIQRIKAN NPDISHREAF STAAKNWAHF PHIHFGLMLE TNNQNKLDDA SEKHLMSRTA 180 LLNK*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007013479.2	1e-136	PREDICTED: axial regulator YABBY 5 isoform X2
Swissprot	Q8GW46	4e-88	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A061GNW0	1e-136	A0A061GNW0_THECC; Plant-specific transcription factor YABBY family protein isoform 1
STRING	EOY31098	1e-137	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5538	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	2e-90	YABBY family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG038105t1
Entrez Gene	18588779

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]