PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG038105t2
Common NameTCM_038105
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family YABBY
Protein Properties Length: 181aa    MW: 20662.4 Da    PI: 9.3271
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG038105t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY169.91.7e-524117521170
             YABBY  21 ilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlk.snvekeesastsvsseklsenedeevprv 112
                       +++vsvP +slf +vtvrCGhCt+l svn+a a q l+ ++         ++ +   ++++++ +  +++++++ s+++        ++v++ 
  Thecc1EG038105t2  41 LFLVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDV--------QAPN--YATQDYRtELGSSSKCNKLSMRT------PANNVTEE 117
                       689****************************99999998884........1112..12222220122222222222222......22233333 PP

             YABBY 113 ppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                         v+rPPekr rvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl
  Thecc1EG038105t2 118 RVVNRPPEKRPRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 175
                       4589****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046909.2E-5941175IPR006780YABBY protein
SuperFamilySSF470954.32E-8119168IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.109.4E-5124169IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
PCNFCNIVLA SKKSHNAKTR EREKERGKEG LRDNYSSFVM LFLVSVPCSS LFDIVTVRCG  60
HCTNLWSVNM AAAFQSLSWQ DVQAPNYATQ DYRTELGSSS KCNKLSMRTP ANNVTEERVV  120
NRPPEKRPRV PSAYNQFIKE EIQRIKANNP DISHREAFST AAKNWAHFPH IHFGLMLETN  180
N
Functional Description ? help Back to Top
Source Description
UniProtPromotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017981942.11e-134PREDICTED: axial regulator YABBY 5 isoform X1
SwissprotQ8GW466e-74YAB5_ARATH; Axial regulator YABBY 5
TrEMBLA0A061GVF31e-134A0A061GVF3_THECC; Plant-specific transcription factor YABBY family protein isoform 2 (Fragment)
STRINGEOY310981e-102(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.23e-76YABBY family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC
    The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity.
    Plant Cell, 2015. 27(12): p. 3321-35
    [PMID:26589551]