PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG038131t1
Common NameTCM_038131
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 252aa    MW: 29307 Da    PI: 7.1472
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG038131t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-151259148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg W +eEd++l+++++ +G g+W+t++++ g+ R +k+c++rw +yl
  Thecc1EG038131t1 12 RGLWKPEEDLILKNYIETHGEGNWATVSKRSGLMRGGKSCRLRWKNYL 59
                      788*******************************************97 PP
2Myb_DNA-binding52.41.2e-1665110148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg +++eE++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l
  Thecc1EG038131t1  65 RGGMSKEEEDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 110
                       67789*****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.329759IPR017930Myb domain
SuperFamilySSF466891.43E-2711106IPR009057Homeodomain-like
SMARTSM007171.6E-121161IPR001005SANT/Myb domain
PfamPF002497.7E-141259IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-211366IPR009057Homeodomain-like
CDDcd001671.08E-91559No hitNo description
PROSITE profilePS5129425.60660114IPR017930Myb domain
SMARTSM007171.8E-1664112IPR001005SANT/Myb domain
PfamPF002495.4E-1565110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2367113IPR009057Homeodomain-like
CDDcd001679.29E-1268110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MENKEMKPQP KRGLWKPEED LILKNYIETH GEGNWATVSK RSGLMRGGKS CRLRWKNYLR  60
PNIKRGGMSK EEEDLIIRMH KLLGNRWSLI AGRLPGRTDN EVKNYWNTHL NKKSVLGKRK  120
TIDSNNQHSD NELDKETLQQ VQDSKKPSQF VHNSQPVFGI SPEKTKTGRL DLDEKKEMQE  180
VKEESSITDS TWMERAAQCF NYEYAYDIVE TPLMMHPNYS NFVFDEEPFT SYLDSFVLFE  240
AFGTDSDQFG I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-23411319127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6238559e-43JX623855.1 Gossypium hirsutum clone NBRI_GE71325 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007013519.20.0PREDICTED: transcription factor MYB82
SwissprotQ9LTF72e-65MYB82_ARATH; Transcription factor MYB82
TrEMBLA0A061GP130.0A0A061GP13_THECC; Myb domain protein 82, putative
STRINGEOY311380.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.18e-68myb domain protein 82
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]