PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG038990t1

Common Name

TCM_038990

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C2H2

Protein Properties

Length: 166aa MW: 18204.1 Da PI: 9.5145

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG038990t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.4	0.00011	42	64	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Thecc1EG038990t1 42 FSCNYCQRKFYSSQALGGHQNAH 64 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.82E-6	39	69	No hit	No description
PROSITE profile	PS50157	11.094	42	69	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	44	64	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MDYQPNTSLR LSLPSSQLNL ELVLEPSSSS SSPHSLAEPR IFSCNYCQRK FYSSQALGGH 60 QNAHKLERTL AKKSRELNSA VRTHGGSNSQ SGSSSVSGSD HAQRMLSPIA PFEQHGRAGR 120 FAGEISLGRR DIHYGSREGI ASWSKGYRPE NVQEEFSQLD LSLRL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269\|PubMed:18192438}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017982475.1	1e-116	PREDICTED: zinc finger protein 2
Swissprot	Q39261	9e-35	ZFP2_ARATH; Zinc finger protein 2
TrEMBL	A0A061GXH5	1e-116	A0A061GXH5_THECC; Zinc finger protein 2, putative
STRING	EOY31809	1e-116	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6621	28	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	2e-26	zinc finger protein 2

Link Out ? help Back to Top
Phytozome	Thecc1EG038990t1
Entrez Gene	18589245

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]