PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG039471t2
Common NameTCM_039471
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 247aa    MW: 27956.9 Da    PI: 4.914
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG039471t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.3e-1358100754
                       HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI++L
  Thecc1EG039471t2  58 VSERNRRKKLNERLFSLRAVVPNiS------KMDKASIIKDAIDYIQEL 100
                       57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.5951100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-1752115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.09E-1254105No hitNo description
Gene3DG3DSA:4.10.280.102.9E-1657115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.9E-1557106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-1158100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.558172244IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MLAMENIENI GDEYKNYWET KYFLENEEYS WAIDEFSGYY DSSSPDGAAS SAASKNIVSE  60
RNRRKKLNER LFSLRAVVPN ISKMDKASII KDAIDYIQEL HEQERRIQAE ILELESGKLK  120
KNPGYEFDQE LPVLLRSKKT KLENIFDSGG SRTSPIEVLE LKVTHMGEKT VVVSITCSKR  180
TDTMVKLCEV FESLKLKIIT ANITAVSGRL LKTVFIEADE KEKDELKAQI ETAIAALNDP  240
QSPMSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-1356116969Transcription factor MYC2
5gnj_B1e-1356116969Transcription factor MYC2
5gnj_E1e-1356116969Transcription factor MYC2
5gnj_F1e-1356116969Transcription factor MYC2
5gnj_G1e-1356116969Transcription factor MYC2
5gnj_I1e-1356116969Transcription factor MYC2
5gnj_M1e-1356116969Transcription factor MYC2
5gnj_N1e-1356116969Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007014436.21e-180PREDICTED: transcription factor bHLH35 isoform X2
SwissprotQ2HIV91e-94BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A061GQC01e-180A0A061GQC0_THECC; Basic helix-loop-helix DNA-binding superfamily protein isoform 2
STRINGGorai.013G242800.11e-163(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.13e-80bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]