PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG039715t2
Common NameTCM_039715
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ARF
Protein Properties Length: 1084aa    MW: 120034 Da    PI: 6.956
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG039715t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.91.7e-22137238199
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++
  Thecc1EG039715t2 137 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RD 226
                       99*****************************9445444.38************************************************..56 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                       ++++l+++++r+
  Thecc1EG039715t2 227 EKQQLLLGIRRA 238
                       88889****997 PP
2Auxin_resp121.56.2e-40263346183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaa+++s+F+v+YnPras+seFv++++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++gvsdldpvrW+nS+Wr+L+
  Thecc1EG039715t2 263 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVYnNQISPGMRFRMMFETEESGTRRYMGTITGVSDLDPVRWKNSQWRNLQ 346
                       79********************************98799*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-43128266IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-41129252IPR015300DNA-binding pseudobarrel domain
CDDcd100176.88E-19136228No hitNo description
PROSITE profilePS5086311.97137239IPR003340B3 DNA binding domain
PfamPF023621.3E-20137238IPR003340B3 DNA binding domain
SMARTSM010196.1E-23137239IPR003340B3 DNA binding domain
PfamPF065072.8E-35263346IPR010525Auxin response factor
PROSITE profilePS5174518.52510051083IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1084 aa     Download sequence    Send to blast
MKMPANGAGA AANVAAPSAA EGGAPEKKSI NPELWQACAG PLVNLPAAGT HVVYFPQGHS  60
EQVAASMKKD VDAQIPNYPN LPSKLLCLLH NVTLHADPET DEVYAQMTLQ PVSAFDKEAL  120
LRSDLSLKAN KPQPEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFSM QPPAQELVAR  180
DLHDNVWTFR HIYRGQPKRH LLTTGWSLFV SGKRLFAGDS VLFIRDEKQQ LLLGIRRANR  240
QPTNLSSSVL SSDSMHIGIL AAAAHAAANN SPFTVFYNPR ASPSEFVIPL AKYYKAVYNN  300
QISPGMRFRM MFETEESGTR RYMGTITGVS DLDPVRWKNS QWRNLQVGWD ESTAGERRNR  360
VSIWEIEPVT APFFICPPPF FRSKRPRQPG IPDDESSDLD NLFKRSMPWL GDDICMKESQ  420
APGLSLVQWM NMQQNSMLAN SMQPNFMQSL SGSVMQNFAG ADLSRQMGLS APQMPQPNNL  480
QFNTQRLPQQ VQQLDQLPKL PSTMNPLGSI MQPQQLSDMT QQSRQNLIAQ TLPSSQVQAQ  540
VLQPQTLVQS NNILHQQQSS IQTHQLPRSL PQNLQQQQQQ QQQQHLMGPN QQQNVMQCPL  600
PDPVNQHLQM PDNQIQFQLL QKLQQQQQSL LAQQSVLQQP AQLAQTQEQQ RQVLDASQSF  660
SRSVTTSQVL ELPPMTPILP PQSNVVSQQT SKHNSHANVR FDQPPLQSKL QQQQQQHGML  720
PEIPGHVGHS PAPTANHLFT AVSSVMTGAA VAAQSVVTDD NPSCSTSPST NCPNVLQPMI  780
NSRVHRSTGL GEDMAQSAAT VLNPNALETM SSNANLIKEL QQKSDVKPSF NISKSQNQGL  840
FAPQTYINGA TAQADYLDTS SSTTSVCLSH NDVNLQQNNS LTYNPQTLLL RDTSQDGEDQ  900
ADPRNNSSYG PNMDGQIGMP MNSDSLLTKG MMGLGKDFSN NLSSGGMLTS YENPKDAQQE  960
LSSSMVSQSF GVPDMTFNSI DSTINDSSFL NRGAWAPPPQ FQRMRTYTKV YKRGAVGRSI  1020
DITRYSGYDE LKQDLARRFG IEGQLEDRGR IGWKLVYVDH EKDVLLVGDD PCLSQEQDLS  1080
HRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1682636747388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007014531.20.0PREDICTED: auxin response factor 19
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A061GRP50.0A0A061GRP5_THECC; Auxin response factor
STRINGEOY321500.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]