PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG040387t1
Common NameTCM_040387
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GATA
Protein Properties Length: 256aa    MW: 28149.8 Da    PI: 8.9985
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG040387t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.81.5e-18201237135
              GATA   1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       Cs  nC+t +Tp+WR+gp g+ktLCnaCG++yrk+++
  Thecc1EG040387t1 201 CSnyNCNTNDTPMWRKGPLGPKTLCNACGIKYRKEEE 237
                       55559*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.5E-12197248IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.38E-12198244No hitNo description
CDDcd002023.84E-9200232No hitNo description
PfamPF003203.4E-16201237IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.0E-13204240IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.477205239IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDHSHQWFNQ ADRMNGYNNN NNVSNRVDLT LKLGLPDCDH QNPLVYQTGQ YVNPTSIAPN  60
HLANLSFAGP NTQGMNELEM VNQGAVAQGQ QSFNASQSAW PSDQLASNVH SMNHENTFNQ  120
ISGPSMGCPS NSTNTYSNFA PTHHHQLPPS SVPTNNYTLL DVPPRRTADQ RELGNSAASG  180
LGKRGQRRQR GGNYNDPNKR CSNYNCNTND TPMWRKGPLG PKTLCNACGI KYRKEEEKRK  240
AKEAGSKGQQ SNHNG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007014829.10.0PREDICTED: GATA transcription factor 29
TrEMBLA0A061GSP90.0A0A061GSP9_THECC; Uncharacterized protein
STRINGEOY324480.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106522234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.13e-16GATA transcription factor 29
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]