PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG040388t2
Common NameTCM_040388
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C3H
Protein Properties Length: 227aa    MW: 23560.7 Da    PI: 8.9225
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG040388t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.23.2e-093156227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                      kt+lC+ f     Ck+Gd+C+FaHg+
  Thecc1EG040388t2 31 KTRLCNKFNTPEGCKFGDKCHFAHGE 56
                      8***********************96 PP
2zf-CCCH37.73.5e-12193217126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       +kt+lC +f++ G C +GdrC+FaHg
  Thecc1EG040388t2 193 FKTKLCENFSK-GSCTFGDRCHFAHG 217
                       69*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.4E-142761IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-82860IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6292957IPR000571Zinc finger, CCCH-type
SMARTSM003560.00562956IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-63156IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.36E-1593170IPR004088K Homology domain, type 1
SMARTSM003223.5E-1299169IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.102.7E-16100169IPR004088K Homology domain, type 1
PROSITE profilePS5008414.508100164IPR004088K Homology domain, type 1
PfamPF000132.0E-11102166IPR004088K Homology domain, type 1
CDDcd001057.11E-15104164No hitNo description
Gene3DG3DSA:4.10.1000.101.7E-16191224IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.075192219IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-7192218IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-9192222IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9193217IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MLGSNPALPA ASRSSAVLPS FPDGSSPPAV KTRLCNKFNT PEGCKFGDKC HFAHGEWELG  60
KPTGPAYEDP RAMGPMPGRM AGRMEPPSQG LGAAASFGAS ATAKISIDAS LAGAIIGKNG  120
VNSKHICRVT GAKLSIRENE SDPSSRNIEL EGTFDQIKQA SAMVRELILN VGSASGTSMK  180
NPAMSGSGAA NNFKTKLCEN FSKGSCTFGD RCHFAHGTEE LRKPGM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017983881.11e-164PREDICTED: zinc finger CCCH domain-containing protein 44
SwissprotQ7F8R05e-81C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A061GRG21e-164A0A061GRG2_THECC; KH domain-containing protein / zinc finger family protein isoform 2
STRINGEOY324491e-164(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-48C3H family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]