PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG040510t2
Common NameTCM_040510
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family EIL
Protein Properties Length: 599aa    MW: 67016.8 Da    PI: 5.2112
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG040510t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3428.75.7e-131383641303
                       XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
              EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLra 93 
                       eel++rmwkd+++l+r+ker+k    +++ a++++k +++++qarrkkmsraQDgiLkYMlk mevc+a+GfvYgiipekgkpv+gas+++ra
  Thecc1EG040510t2  38 EELERRMWKDRIKLNRIKERQKIA--AQQ-AAEKQKPKQTTDQARRKKMSRAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSGASENIRA 127
                       8**************999999963..455.599************************************************************ PP

                       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT- CS
              EIN3  94 WWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelgl 186
                       WWkekv+fd+ngpaai+ky+a+++++s+++s+  ++ + ++sl++lqD+tlgSLLs+lmqhcdppqr++plek ++pPWWPtG+e+ww +lgl
  Thecc1EG040510t2 128 WWKEKVKFDKNGPAAIAKYEAECIAMSESDSN--RNGNLQSSLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKRIPPPWWPTGNEEWWVRLGL 218
                       *********************99999987777..689999***************************************************** PP

                       -TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX.........XXXXX CS
              EIN3 187 skdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss.........slrkq 270
                       ++ q  ppykkphdlkk+wkv+vLtavikhmsp+i++ir+l+rqsk+lqdkm+akes+++l vl++ee+++++ s+++            r +
  Thecc1EG040510t2 219 QQGQT-PPYKKPHDLKKMWKVGVLTAVIKHMSPDIAKIRRLVRQSKCLQDKMTAKESAIWLGVLSREEALIQQPSSDNGtsgitemlaGGRGN 310
                       *9987.***********************************************************************4445688777655669 PP

                       XXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX.....................X CS
              EIN3 271 spkvtlsceqkedvegkkeskikhvqavktta.....................g 303
                       +++  +s+++++dv+g +e   + ++++++++                     +
  Thecc1EG040510t2 311 KKQPAISSDSDYDVDGGEEGVGSVSSKDDRRNqptdaepvayisndvshpvqeK 364
                       99999**********888887787777777777788888888888665555442 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.5E-12438285No hitNo description
Gene3DG3DSA:1.10.3180.103.5E-71159293IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167681.96E-61166288IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042762Biological Processregulation of sulfur metabolic process
GO:0071281Biological Processcellular response to iron ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MGEFEDIGAD ISSDIEVDDL RCENIAEKDV SDEEIEAEEL ERRMWKDRIK LNRIKERQKI  60
AAQQAAEKQK PKQTTDQARR KKMSRAQDGI LKYMLKLMEV CKARGFVYGI IPEKGKPVSG  120
ASENIRAWWK EKVKFDKNGP AAIAKYEAEC IAMSESDSNR NGNLQSSLQD LQDATLGSLL  180
SSLMQHCDPP QRKYPLEKRI PPPWWPTGNE EWWVRLGLQQ GQTPPYKKPH DLKKMWKVGV  240
LTAVIKHMSP DIAKIRRLVR QSKCLQDKMT AKESAIWLGV LSREEALIQQ PSSDNGTSGI  300
TEMLAGGRGN KKQPAISSDS DYDVDGGEEG VGSVSSKDDR RNQPTDAEPV AYISNDVSHP  360
VQEKEPVGKH PKKRRRLRSS DGDEQPGPSD EHANTESRST LPDINQTDVS FLEYQMPGAQ  420
KENDASTALR HVEKGLDVPP HLPASGYSHY PAIPSANKIS TQSMYVDGRP MLYPLVQDAE  480
LPNGAAYEFY NPSVEFGPTH EGQQTQMEMN VTQIRPENGV HVSLPGRNEN EITVGELHHY  540
VKDIFQNEQD RAGHNPFGSP TSDPSLYGAF HSPYEFGFDG TSSLDELFDD DLIEYFGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A1e-721652969140ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1370376PKKRRRL
2372376KRRRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00233DAPTransfer from AT1G73730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017982625.10.0PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein
RefseqXP_017982626.10.0PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein
SwissprotO231160.0EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLA0A061GSY60.0A0A061GSY6_THECC; Ethylene-insensitive 3f isoform 1
STRINGEOY325340.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.11e-179ETHYLENE-INSENSITIVE3-like 3
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  3. Zheng ZL,Zhang B,Leustek T
    Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing.
    Front Plant Sci, 2014. 5: p. 710
    [PMID:25566284]
  4. Panda SK,Sunkar R
    Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling.
    Plant Signal Behav, 2015. 10(4): p. e1010916
    [PMID:25912823]
  5. Wawrzyńska A,Sirko A
    EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor.
    Plant Sci., 2016. 253: p. 50-57
    [PMID:27968996]