PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG040564t4
Common NameTCM_040564
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 211aa    MW: 23304.1 Da    PI: 8.2249
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG040564t4genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.4e-13154199655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +++Er RR +i +++ +L++l+P+     +k  + a++L +Av+YIk+Lq
  Thecc1EG040564t4 154 SIAERVRRTKISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKDLQ 199
                       689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.288148198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-16151207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.49E-13152203No hitNo description
Gene3DG3DSA:4.10.280.105.9E-16153208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-14154204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-10154199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010119Biological Processregulation of stomatal movement
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MGDYGGVNNS NREASFPSAS RPPPSGLMSP IAEMGNKNVV PNSSENAGFG ENRHNNYSSG  60
FPVTSWEDSM MISDNMPGVK RLREDDRSLS GLDLDGAETQ NTDAGNRPPP ILAHHLSLPK  120
SSAEMSAIDK FLQYQDSVPC KIRAKRGCAT HPRSIAERVR RTKISERMRK LQDLVPNMDK  180
QTNTADMLDL AVDYIKDLQN QVKTLSDNRA K
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007014950.21e-154PREDICTED: transcription factor bHLH122 isoform X2
SwissprotQ66GR37e-61BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A061GST11e-155A0A061GST1_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 4 (Fragment)
TrEMBLA0A061GZ591e-153A0A061GZ59_THECC; DNA binding protein, putative isoform 2
STRINGEOY325681e-154(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.15e-59bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]