PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG040620t1

Common Name

TCM_040620

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Trihelix

Protein Properties

Length: 455aa MW: 51226.4 Da PI: 5.5809

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG040620t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68.8	1.1e-21	121	217	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 +Wt++ v++Li+++ ++++ + +kk++W+ vsk m ++g+++sp+qC++k+++lnkrykk++++ +++ +++++++ ++ Thecc1EG040620t1 121 KWTDNVVRLLIAVVACVGDDGMIEGvegpkrksgilQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKKLNDILGRGtSCRVVENPSL 213 7************888888854334556667888********************************************66999999999 PP trihelix 82 fdql 85 d++ Thecc1EG040620t1 214 MDSM 217 9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.0E-18	119	244	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MENSGLGGGF LSGPNGGLFD LESSINRQQK PQLGQPSLIP HHNMVLMSEN DHRSTGVMEA 60 KGCNPKGFPM NFGKGKGVSP ISAMNNGSMS EEDEPSYIED GNGENSIGGK GKKGSPWQRM 120 KWTDNVVRLL IAVVACVGDD GMIEGVEGPK RKSGILQKKG KWKTVSKIMI SKGCHVSPQQ 180 CEDKFNDLNK RYKKLNDILG RGTSCRVVEN PSLMDSMPHL SAKAKDDVKK ILSSKHLFYP 240 EMCAYHNGQR IPNCQDLDLQ GCFVPLDRCL KDNNGSDEEE AEGNDDSEDD DEMDNEDDNN 300 ADGDDERIGE LNKRKKASAE EGHFWSQSAE QDSLKVEMAG IFHDPTRSSL ERKEWIKRQI 360 LQLQEERVNL QVEGFELEKQ RFKWLRYCNK KGRELERLRL ENERMRLENE RSLLQLRQKE 420 LEVGFRSSDA SLDPTSLGID RLQSRDQIDL GRHQ*

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MENSGLGGGF LSGPNGGLFD LESSINRQQK PQLGQPSLIP HHNMVLMSEN DHRSTGVMEA  60
KGCNPKGFPM NFGKGKGVSP ISAMNNGSMS EEDEPSYIED GNGENSIGGK GKKGSPWQRM  120
KWTDNVVRLL IAVVACVGDD GMIEGVEGPK RKSGILQKKG KWKTVSKIMI SKGCHVSPQQ  180
CEDKFNDLNK RYKKLNDILG RGTSCRVVEN PSLMDSMPHL SAKAKDDVKK ILSSKHLFYP  240
EMCAYHNGQR IPNCQDLDLQ GCFVPLDRCL KDNNGSDEEE AEGNDDSEDD DEMDNEDDNN  300
ADGDDERIGE LNKRKKASAE EGHFWSQSAE QDSLKVEMAG IFHDPTRSSL ERKEWIKRQI  360
LQLQEERVNL QVEGFELEKQ RFKWLRYCNK KGRELERLRL ENERMRLENE RSLLQLRQKE  420
LEVGFRSSDA SLDPTSLGID RLQSRDQIDL GRHQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017982037.1	0.0	PREDICTED: uncharacterized protein LOC18589797
TrEMBL	A0A061GTX7	0.0	A0A061GTX7_THECC; Sequence-specific DNA binding transcription factors
STRING	EOY32612	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16739	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	4e-69	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Thecc1EG040620t1
Entrez Gene	18589797

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]